HL_9NLJ_005

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9NLJ|1|R1|A|196, 9NLJ|1|R1|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_005 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.1014

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9NLJ|1|R1|G|194
9NLJ|1|R1|A|195
9NLJ|1|R1|A|196
9NLJ|1|R1|A|197
9NLJ|1|R1|C|198
9NLJ|1|R1|A|199
9NLJ|1|R1|U|200
9NLJ|1|R1|C|201

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 28

50S ribosomal protein L28