HL_9NLJ_018

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_018 not in the Motif Atlas

Homologous match to HL_5J7L_153

Geometric discrepancy: 0.2167

The information below is about HL_5J7L_153

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13529.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9NLJ|1|R1|U|641
9NLJ|1|R1|U|642
9NLJ|1|R1|A|643
9NLJ|1|R1|A|644
9NLJ|1|R1|C|645
9NLJ|1|R1|U|646
9NLJ|1|R1|G|647

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 33

Large ribosomal subunit protein bL33

Chain 35

Large ribosomal subunit protein bL35