HL_9NLJ_020

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

9NLJ|1|R1|U|747, 9NLJ|1|R1|A|751, 9NLJ|1|R1|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_020 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1806

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

9NLJ|1|R1|U|744
9NLJ|1|R1|G|745
9NLJ|1|R1|U|746
9NLJ|1|R1|U|747
9NLJ|1|R1|G|748
9NLJ|1|R1|A|749
9NLJ|1|R1|A|750
9NLJ|1|R1|A|751
9NLJ|1|R1|A|752
9NLJ|1|R1|A|753

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32

Chain 34

50S ribosomal protein L34