HL_9NLJ_026

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUUGGCUUAGAAGCAGCCAUCA

Length

23 nucleotides

Bulged bases

9NLJ|1|R1|U|1061, 9NLJ|1|R1|U|1065, 9NLJ|1|R1|U|1066, 9NLJ|1|R1|A|1067, 9NLJ|1|R1|A|1070, 9NLJ|1|R1|G|1071, 9NLJ|1|R1|C|1072, 9NLJ|1|R1|G|1074, 9NLJ|1|R1|U|1078

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R1|U|1058
9NLJ|1|R1|G|1059
9NLJ|1|R1|U|1060
9NLJ|1|R1|U|1061
9NLJ|1|R1|G|1062
9NLJ|1|R1|G|1063
9NLJ|1|R1|C|1064
9NLJ|1|R1|U|1065
9NLJ|1|R1|U|1066
9NLJ|1|R1|A|1067
9NLJ|1|R1|G|1068
9NLJ|1|R1|A|1069
9NLJ|1|R1|A|1070
9NLJ|1|R1|G|1071
9NLJ|1|R1|C|1072
9NLJ|1|R1|A|1073
9NLJ|1|R1|G|1074
9NLJ|1|R1|C|1075
9NLJ|1|R1|C|1076
9NLJ|1|R1|A|1077
9NLJ|1|R1|U|1078
9NLJ|1|R1|C|1079
9NLJ|1|R1|A|1080

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16