HL_9NLJ_028

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGCUUAUGCGU

Length

12 nucleotides

Bulged bases

9NLJ|1|R1|U|1173, 9NLJ|1|R1|U|1174, 9NLJ|1|R1|A|1175, 9NLJ|1|R1|U|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_028 not in the Motif Atlas

Homologous match to HL_4WF9_030

Geometric discrepancy: 0.4536

The information below is about HL_4WF9_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R1|A|1169
9NLJ|1|R1|C|1170
9NLJ|1|R1|G|1171
9NLJ|1|R1|C|1172
9NLJ|1|R1|U|1173
9NLJ|1|R1|U|1174
9NLJ|1|R1|A|1175
9NLJ|1|R1|U|1176
9NLJ|1|R1|G|1177
9NLJ|1|R1|C|1178
9NLJ|1|R1|G|1179
9NLJ|1|R1|U|1180

Current chains

Chain R1

23S ribosomal RNA

Nearby chains