HL_9NLJ_033

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9NLJ|1|R1|U|1396, 9NLJ|1|R1|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_033 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1207

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9NLJ|1|R1|G|1389
9NLJ|1|R1|U|1390
9NLJ|1|R1|U|1391
9NLJ|1|R1|A|1392
9NLJ|1|R1|A|1393
9NLJ|1|R1|U|1394
9NLJ|1|R1|A|1395
9NLJ|1|R1|U|1396
9NLJ|1|R1|U|1397
9NLJ|1|R1|C|1398

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23