HL_9NLJ_049

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCC

Length

35 nucleotides

Bulged bases

9NLJ|1|R1|U|2132, 9NLJ|1|R1|C|2145, 9NLJ|1|R1|A|2147

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R1|G|2127
9NLJ|1|R1|G|2128
9NLJ|1|R1|C|2129
9NLJ|1|R1|U|2130
9NLJ|1|R1|U|2131
9NLJ|1|R1|U|2132
9NLJ|1|R1|G|2133
9NLJ|1|R1|A|2134
9NLJ|1|R1|A|2135
9NLJ|1|R1|G|2136
9NLJ|1|R1|U|2137
9NLJ|1|R1|G|2138
9NLJ|1|R1|U|2139
9NLJ|1|R1|G|2140
9NLJ|1|R1|G|2141
9NLJ|1|R1|A|2142
9NLJ|1|R1|C|2143
9NLJ|1|R1|G|2144
9NLJ|1|R1|C|2145
9NLJ|1|R1|C|2146
9NLJ|1|R1|A|2147
9NLJ|1|R1|G|2148
9NLJ|1|R1|U|2149
9NLJ|1|R1|C|2150
9NLJ|1|R1|U|2151
9NLJ|1|R1|G|2152
9NLJ|1|R1|C|2153
9NLJ|1|R1|A|2154
9NLJ|1|R1|U|2155
9NLJ|1|R1|G|2156
9NLJ|1|R1|G|2157
9NLJ|1|R1|A|2158
9NLJ|1|R1|G|2159
9NLJ|1|R1|C|2160
9NLJ|1|R1|C|2161

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain U

Uup

Chain sk

Small ribosomal subunit protein uS11