HL_9NLJ_050

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

9NLJ|1|R1|A|2211, 9NLJ|1|R1|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_050 not in the Motif Atlas

Homologous match to HL_4WF9_048

Geometric discrepancy: 0.4793

The information below is about HL_4WF9_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81964.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9NLJ|1|R1|G|2209
9NLJ|1|R1|U|2210
9NLJ|1|R1|A|2211
9NLJ|1|R1|A|2212
9NLJ|1|R1|U|2213
9NLJ|1|R1|C|2214
9NLJ|1|R1|C|2215

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2