HL_9NLJ_051

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9NLJ|1|R1|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_051 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.2092

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9NLJ|1|R1|C|2248
9NLJ|1|R1|U|2249
9NLJ|1|R1|G|2250
9NLJ|1|R1|G|2251
9NLJ|1|R1|G|2252
9NLJ|1|R1|G|2253
9NLJ|1|R1|C|2254
9NLJ|1|R1|G|2255
9NLJ|1|R1|G|2256

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain 27

Large ribosomal subunit protein bL27

Chain T

Transfer RNA; tRNA

Chain U

Uup