HL_9NLJ_065

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

9NLJ|1|R1|U|2797, 9NLJ|1|R1|U|2798, 9NLJ|1|R1|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_065 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.4959

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9NLJ|1|R1|C|2795
9NLJ|1|R1|U|2796
9NLJ|1|R1|U|2797
9NLJ|1|R1|U|2798
9NLJ|1|R1|A|2799
9NLJ|1|R1|A|2800
9NLJ|1|R1|G|2801

Current chains

Chain R1

23S ribosomal RNA

Nearby chains