3D structure

PDB id
9NLJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli Initiation complex with Uup-EQ2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUUAAG
Length
7 nucleotides
Bulged bases
9NLJ|1|R1|U|2797, 9NLJ|1|R1|U|2798, 9NLJ|1|R1|A|2800
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NLJ_065 not in the Motif Atlas
Homologous match to HL_5J7L_200
Geometric discrepancy: 0.4959
The information below is about HL_5J7L_200
Detailed Annotation
UNCG variation
Broad Annotation
UNCG variation
Motif group
HL_08100.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

9NLJ|1|R1|C|2795
9NLJ|1|R1|U|2796
9NLJ|1|R1|U|2797
9NLJ|1|R1|U|2798
9NLJ|1|R1|A|2799
9NLJ|1|R1|A|2800
9NLJ|1|R1|G|2801

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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