HL_9NLJ_071

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAGAAGCUUGCUUCUUUGC

Length

21 nucleotides

Bulged bases

9NLJ|1|R3|A|81, 9NLJ|1|R3|C|83, 9NLJ|1|R3|U|84, 9NLJ|1|R3|U|85, 9NLJ|1|R3|U|92, 9NLJ|1|R3|U|93

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R3|G|75
9NLJ|1|R3|G|76
9NLJ|1|R3|A|77
9NLJ|1|R3|A|78
9NLJ|1|R3|G|79
9NLJ|1|R3|A|80
9NLJ|1|R3|A|81
9NLJ|1|R3|G|82
9NLJ|1|R3|C|83
9NLJ|1|R3|U|84
9NLJ|1|R3|U|85
9NLJ|1|R3|G|86
9NLJ|1|R3|C|87
9NLJ|1|R3|U|88
9NLJ|1|R3|U|89
9NLJ|1|R3|C|90
9NLJ|1|R3|U|91
9NLJ|1|R3|U|92
9NLJ|1|R3|U|93
9NLJ|1|R3|G|94
9NLJ|1|R3|C|95

Current chains

Chain R3

16S ribosomal RNA

Nearby chains