HL_9NLJ_077

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAACUGAGACACGGUC

Length

16 nucleotides

Bulged bases

9NLJ|1|R3|C|330, 9NLJ|1|R3|G|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R3|G|319
9NLJ|1|R3|A|320
9NLJ|1|R3|A|321
9NLJ|1|R3|C|322
9NLJ|1|R3|U|323
9NLJ|1|R3|G|324
9NLJ|1|R3|A|325
9NLJ|1|R3|G|326
9NLJ|1|R3|A|327
9NLJ|1|R3|C|328
9NLJ|1|R3|A|329
9NLJ|1|R3|C|330
9NLJ|1|R3|G|331
9NLJ|1|R3|G|332
9NLJ|1|R3|U|333
9NLJ|1|R3|C|334

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16

Chain st

30S ribosomal protein S20