HL_9NLJ_080

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9NLJ|1|R3|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_080 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.2585

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

9NLJ|1|R3|C|419
9NLJ|1|R3|U|420
9NLJ|1|R3|U|421
9NLJ|1|R3|C|422
9NLJ|1|R3|G|423
9NLJ|1|R3|G|424

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sc

Small ribosomal subunit protein uS3

Chain sd

30S ribosomal protein S4