HL_9NLJ_081

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAAAGUUAAUACCUUUGCUC

Length

23 nucleotides

Bulged bases

9NLJ|1|R3|G|462, 9NLJ|1|R3|U|467, 9NLJ|1|R3|U|473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R3|G|455
9NLJ|1|R3|A|456
9NLJ|1|R3|G|457
9NLJ|1|R3|U|458
9NLJ|1|R3|A|459
9NLJ|1|R3|A|460
9NLJ|1|R3|A|461
9NLJ|1|R3|G|462
9NLJ|1|R3|U|463
9NLJ|1|R3|U|464
9NLJ|1|R3|A|465
9NLJ|1|R3|A|466
9NLJ|1|R3|U|467
9NLJ|1|R3|A|468
9NLJ|1|R3|C|469
9NLJ|1|R3|C|470
9NLJ|1|R3|U|471
9NLJ|1|R3|U|472
9NLJ|1|R3|U|473
9NLJ|1|R3|G|474
9NLJ|1|R3|C|475
9NLJ|1|R3|U|476
9NLJ|1|R3|C|477

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16