HL_9NLJ_088

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_088 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.176

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9NLJ|1|R3|C|862
9NLJ|1|R3|U|863
9NLJ|1|R3|A|864
9NLJ|1|R3|A|865
9NLJ|1|R3|C|866
9NLJ|1|R3|G|867

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain se

Small ribosomal subunit protein uS5