HL_9NLQ_022

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

9NLQ|1|R1|A|781, 9NLQ|1|R1|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLQ_022 not in the Motif Atlas

Geometric match to HL_6JQ6_004

Geometric discrepancy: 0.3844

The information below is about HL_6JQ6_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

9NLQ|1|R1|U|779
9NLQ|1|R1|G|780
9NLQ|1|R1|A|781
9NLQ|1|R1|A|782
9NLQ|1|R1|A|783
9NLQ|1|R1|G|784
9NLQ|1|R1|G|785

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2