HL_9NLQ_029

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUUAUGC

Length

8 nucleotides

Bulged bases

9NLQ|1|R1|U|1174, 9NLQ|1|R1|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLQ_029 not in the Motif Atlas

Homologous match to HL_4WF9_030

Geometric discrepancy: 0.4864

The information below is about HL_4WF9_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLQ|1|R1|G|1171
9NLQ|1|R1|C|1172
9NLQ|1|R1|U|1173
9NLQ|1|R1|U|1174
9NLQ|1|R1|A|1175
9NLQ|1|R1|U|1176
9NLQ|1|R1|G|1177
9NLQ|1|R1|C|1178

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15