HL_9NLQ_055

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLQ_055 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.2067

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9NLQ|1|R1|G|2304
9NLQ|1|R1|U|2305
9NLQ|1|R1|C|2306
9NLQ|1|R1|G|2307
9NLQ|1|R1|G|2308
9NLQ|1|R1|A|2309
9NLQ|1|R1|C|2310
9NLQ|1|R1|A|2311
9NLQ|1|R1|U|2312

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L5