HL_9NLQ_079

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLQ_079 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1074

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9NLQ|1|R3|A|320
9NLQ|1|R3|A|321
9NLQ|1|R3|C|322
9NLQ|1|R3|U|323
9NLQ|1|R3|G|324
9NLQ|1|R3|A|325
9NLQ|1|R3|G|326
9NLQ|1|R3|A|327
9NLQ|1|R3|C|328
9NLQ|1|R3|A|329
9NLQ|1|R3|C|330
9NLQ|1|R3|G|331
9NLQ|1|R3|G|332
9NLQ|1|R3|U|333

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16

Chain st

30S ribosomal protein S20