3D structure

PDB id
9NLS (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGACCAUC
Length
8 nucleotides
Bulged bases
9NLS|1|R1|G|411
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NLS_012 not in the Motif Atlas
Homologous match to HL_5J7L_146
Geometric discrepancy: 0.108
The information below is about HL_5J7L_146
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_30680.3
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
15

Unit IDs

9NLS|1|R1|G|410
9NLS|1|R1|G|411
9NLS|1|R1|A|412
9NLS|1|R1|C|413
9NLS|1|R1|C|414
9NLS|1|R1|A|415
9NLS|1|R1|U|416
9NLS|1|R1|C|417

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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