HL_9NLS_024

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUCAUCCCGACU

Length

13 nucleotides

Bulged bases

9NLS|1|R1|A|886, 9NLS|1|R1|U|887, 9NLS|1|R1|G|891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLS|1|R1|G|882
9NLS|1|R1|G|883
9NLS|1|R1|U|884
9NLS|1|R1|C|885
9NLS|1|R1|A|886
9NLS|1|R1|U|887
9NLS|1|R1|C|888
9NLS|1|R1|C|889
9NLS|1|R1|C|890
9NLS|1|R1|G|891
9NLS|1|R1|A|892
9NLS|1|R1|C|893
9NLS|1|R1|U|894

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain sm

30S ribosomal protein S13