HL_9NLS_027

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUGUUGGCUUAGAAGCAGCCAUCAUU

Length

26 nucleotides

Bulged bases

9NLS|1|R1|U|1061, 9NLS|1|R1|U|1065, 9NLS|1|R1|U|1066, 9NLS|1|R1|A|1067, 9NLS|1|R1|A|1070, 9NLS|1|R1|A|1073, 9NLS|1|R1|G|1074

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLS|1|R1|A|1057
9NLS|1|R1|U|1058
9NLS|1|R1|G|1059
9NLS|1|R1|U|1060
9NLS|1|R1|U|1061
9NLS|1|R1|G|1062
9NLS|1|R1|G|1063
9NLS|1|R1|C|1064
9NLS|1|R1|U|1065
9NLS|1|R1|U|1066
9NLS|1|R1|A|1067
9NLS|1|R1|G|1068
9NLS|1|R1|A|1069
9NLS|1|R1|A|1070
9NLS|1|R1|G|1071
9NLS|1|R1|C|1072
9NLS|1|R1|A|1073
9NLS|1|R1|G|1074
9NLS|1|R1|C|1075
9NLS|1|R1|C|1076
9NLS|1|R1|A|1077
9NLS|1|R1|U|1078
9NLS|1|R1|C|1079
9NLS|1|R1|A|1080
9NLS|1|R1|U|1081
9NLS|1|R1|U|1082

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16