HL_9NLS_067

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9NLS|1|R1|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1035

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9NLS|1|R1|G|2819
9NLS|1|R1|A|2820
9NLS|1|R1|A|2821
9NLS|1|R1|G|2822
9NLS|1|R1|A|2823
9NLS|1|R1|C|2824
9NLS|1|R1|G|2825
9NLS|1|R1|A|2826
9NLS|1|R1|C|2827

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17

Chain 3

50S ribosomal protein L3