HL_9NLS_068

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_068 not in the Motif Atlas

Homologous match to HL_7A0S_068

Geometric discrepancy: 0.1103

The information below is about HL_7A0S_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9NLS|1|R1|A|2856
9NLS|1|R1|G|2857
9NLS|1|R1|C|2858
9NLS|1|R1|G|2859
9NLS|1|R1|A|2860
9NLS|1|R1|U|2861

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L19

Chain R3

Small subunit ribosomal RNA; SSU rRNA