HL_9NLS_075

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

9NLS|1|R3|U|208, 9NLS|1|R3|U|209, 9NLS|1|R3|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_075 not in the Motif Atlas

Homologous match to HL_6CZR_234

Geometric discrepancy: 0.5878

The information below is about HL_6CZR_234

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

9NLS|1|R3|C|206
9NLS|1|R3|C|207
9NLS|1|R3|U|208
9NLS|1|R3|U|209
9NLS|1|R3|C|210
9NLS|1|R3|G|211
9NLS|1|R3|G|212
9NLS|1|R3|G|213

Current chains

Chain R3

16S ribosomal RNA

Nearby chains