HL_9NLS_079

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9NLS|1|R3|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_079 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1221

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9NLS|1|R3|C|342
9NLS|1|R3|U|343
9NLS|1|R3|A|344
9NLS|1|R3|C|345
9NLS|1|R3|G|346
9NLS|1|R3|G|347

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 19

50S ribosomal protein L19