HL_9NLS_081

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGAAGGCCUUCGGGUUGUAAAG

Length

25 nucleotides

Bulged bases

9NLS|1|R3|U|421, 9NLS|1|R3|C|422, 9NLS|1|R3|G|423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLS|1|R3|U|409
9NLS|1|R3|G|410
9NLS|1|R3|A|411
9NLS|1|R3|A|412
9NLS|1|R3|G|413
9NLS|1|R3|A|414
9NLS|1|R3|A|415
9NLS|1|R3|G|416
9NLS|1|R3|G|417
9NLS|1|R3|C|418
9NLS|1|R3|C|419
9NLS|1|R3|U|420
9NLS|1|R3|U|421
9NLS|1|R3|C|422
9NLS|1|R3|G|423
9NLS|1|R3|G|424
9NLS|1|R3|G|425
9NLS|1|R3|U|426
9NLS|1|R3|U|427
9NLS|1|R3|G|428
9NLS|1|R3|U|429
9NLS|1|R3|A|430
9NLS|1|R3|A|431
9NLS|1|R3|A|432
9NLS|1|R3|G|433

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sc

Small ribosomal subunit protein uS3

Chain sd

30S ribosomal protein S4