HL_9NLS_082

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9NLS|1|R3|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.412

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9NLS|1|R3|G|462
9NLS|1|R3|U|463
9NLS|1|R3|U|464
9NLS|1|R3|A|465
9NLS|1|R3|A|466
9NLS|1|R3|U|467
9NLS|1|R3|A|468
9NLS|1|R3|C|469
9NLS|1|R3|C|470

Current chains

Chain R3

16S ribosomal RNA

Nearby chains