HL_9NLS_086

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_086 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.1379

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9NLS|1|R3|C|726
9NLS|1|R3|G|727
9NLS|1|R3|A|728
9NLS|1|R3|A|729
9NLS|1|R3|G|730
9NLS|1|R3|G|731

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain so

Small ribosomal subunit protein uS15