HL_9NLS_096

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9NLS|1|R3|C|1136, 9NLS|1|R3|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_096 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2538

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

9NLS|1|R3|G|1134
9NLS|1|R3|U|1135
9NLS|1|R3|C|1136
9NLS|1|R3|C|1137
9NLS|1|R3|G|1138
9NLS|1|R3|G|1139
9NLS|1|R3|C|1140

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain si

Small ribosomal subunit protein uS9