HL_9NLS_097

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

9NLS|1|R3|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_097 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.3182

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9NLS|1|R3|U|1165
9NLS|1|R3|G|1166
9NLS|1|R3|A|1167
9NLS|1|R3|U|1168
9NLS|1|R3|A|1169
9NLS|1|R3|A|1170
9NLS|1|R3|A|1171

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain su

Small ribosomal subunit protein bS21