HL_9NLS_100
3D structure
- PDB id
- 9NLS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 9NLS|1|R3|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NLS_100 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1842
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9NLS|1|R3|G|1356
9NLS|1|R3|A|1357
9NLS|1|R3|U|1358
9NLS|1|R3|C|1359
9NLS|1|R3|A|1360
9NLS|1|R3|G|1361
9NLS|1|R3|A|1362
9NLS|1|R3|A|1363
9NLS|1|R3|U|1364
9NLS|1|R3|G|1365
9NLS|1|R3|C|1366
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain sc
- Small ribosomal subunit protein uS3
- Chain si
- Small ribosomal subunit protein uS9
- Chain sj
- 30S ribosomal protein S10
- Chain sn
- Small ribosomal subunit protein uS14
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