HL_9NLS_101

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9NLS|1|R3|U|1451, 9NLS|1|R3|C|1452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_101 not in the Motif Atlas

Homologous match to HL_5J7L_030

Geometric discrepancy: 0.5535

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9NLS|1|R3|C|1449
9NLS|1|R3|U|1450
9NLS|1|R3|U|1451
9NLS|1|R3|C|1452
9NLS|1|R3|G|1453
9NLS|1|R3|G|1454

Current chains

Chain R3

16S ribosomal RNA

Nearby chains