HL_9O2X_004

3D structure

PDB id

9O2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O2X_004 not in the Motif Atlas

Geometric match to HL_4Y1M_003

Geometric discrepancy: 0.1165

The information below is about HL_4Y1M_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9O2X|1|A|C|186
9O2X|1|A|G|187
9O2X|1|A|C|188
9O2X|1|A|A|189
9O2X|1|A|A|190
9O2X|1|A|G|191

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20