HL_9O3I_049

3D structure

PDB id

9O3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

9O3I|1|1A|C|2145, 9O3I|1|1A|C|2146

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3I_049 not in the Motif Atlas

Geometric match to HL_8CRE_195

Geometric discrepancy: 0.3528

The information below is about HL_8CRE_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.3

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

9O3I|1|1A|C|2143
9O3I|1|1A|U|2144
9O3I|1|1A|C|2145
9O3I|1|1A|C|2146
9O3I|1|1A|G|2147
9O3I|1|1A|G|2148

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains