HL_9O3I_208
3D structure
- PDB id
- 9O3I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9O3I_208 not in the Motif Atlas
- Geometric match to HL_7UQ6_003
- Geometric discrepancy: 0.124
- The information below is about HL_7UQ6_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
9O3I|1|2x|G|53
9O3I|1|2x|5MU|54
9O3I|1|2x|PSU|55
9O3I|1|2x|C|56
9O3I|1|2x|A|57
9O3I|1|2x|A|58
9O3I|1|2x|A|59
9O3I|1|2x|U|60
9O3I|1|2x|C|61
Current chains
- Chain 2x
- P-site Peptidyl-tRNA fMRC-tRNAcys RNA-part
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2G
- 50S ribosomal protein L5
- Chain 2Q
- 50S ribosomal protein L16
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