HL_9O3J_020
3D structure
- PDB id
- 9O3J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGUGAGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9O3J_020 not in the Motif Atlas
- Geometric match to HL_9DFE_020
- Geometric discrepancy: 0.0684
- The information below is about HL_9DFE_020
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_68642.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
9O3J|1|1A|G|712
9O3J|1|1A|G|713
9O3J|1|1A|U|714
9O3J|1|1A|G|715
9O3J|1|1A|A|716
9O3J|1|1A|G|717
9O3J|1|1A|A|718
9O3J|1|1A|C|719
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1o
- 30S ribosomal protein S15
- Chain 1q
- 30S ribosomal protein S17
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