HL_9O3J_167

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3J_167 not in the Motif Atlas

Geometric match to HL_9DFE_063

Geometric discrepancy: 0.0741

The information below is about HL_9DFE_063

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_64036.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

20

Unit IDs

9O3J|1|2A|C|2701
9O3J|1|2A|U|2702
9O3J|1|2A|C|2703
9O3J|1|2A|C|2704
9O3J|1|2A|A|2705
9O3J|1|2A|G|2706

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17