HL_9O3K_048

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9O3K|1|1A|A|2030, 9O3K|1|1A|A|2031, 9O3K|1|1A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3K_048 not in the Motif Atlas

Geometric match to HL_9DFE_048

Geometric discrepancy: 0.067

The information below is about HL_9DFE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

9O3K|1|1A|G|2027
9O3K|1|1A|U|2028
9O3K|1|1A|G|2029
9O3K|1|1A|A|2030
9O3K|1|1A|A|2031
9O3K|1|1A|G|2032
9O3K|1|1A|A|2033
9O3K|1|1A|U|2034
9O3K|1|1A|G|2035
9O3K|1|1A|C|2036

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1V

50S ribosomal protein L21