HL_9O3K_106
3D structure
- PDB id
- 9O3K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- ACU(U8U)UU(T6A)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- 9O3K|1|1y|U|33
- QA status
- Modified nucleotides: U8U, T6A, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9O3K_106 not in the Motif Atlas
- Geometric match to HL_3W3S_002
- Geometric discrepancy: 0.3947
- The information below is about HL_3W3S_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
9O3K|1|1y|A|31
9O3K|1|1y|C|32
9O3K|1|1y|U|33
9O3K|1|1y|U8U|34
9O3K|1|1y|U|35
9O3K|1|1y|U|36
9O3K|1|1y|T6A|37
9O3K|1|1y|A|38
9O3K|1|1y|PSU|39
Current chains
- Chain 1y
- E-site Deacylated tRNAlys
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1g
- 30S ribosomal protein S7
- Chain 1k
- 30S ribosomal protein S11
- Chain 1v
- MET-LYS-mRNA
- Chain 1x
- Transfer RNA; tRNA
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