HL_9O3K_158

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3K_158 not in the Motif Atlas

Geometric match to HL_9DFE_054

Geometric discrepancy: 0.0761

The information below is about HL_9DFE_054

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9O3K|1|2A|C|2324
9O3K|1|2A|G|2325
9O3K|1|2A|C|2326
9O3K|1|2A|A|2327
9O3K|1|2A|A|2328
9O3K|1|2A|G|2329
9O3K|1|2A|G|2330
9O3K|1|2A|G|2331

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2G

50S ribosomal protein L5

Chain 2Q

50S ribosomal protein L16

Chain 2x

Transfer RNA; tRNA