HL_9O3K_211
3D structure
- PDB id
- 9O3K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- G(5MU)(PSU)CGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 9O3K|1|2y|C|56, 9O3K|1|2y|G|57
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9O3K_211 not in the Motif Atlas
- Geometric match to HL_1J2B_002
- Geometric discrepancy: 0.3373
- The information below is about HL_1J2B_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
9O3K|1|2y|G|53
9O3K|1|2y|5MU|54
9O3K|1|2y|PSU|55
9O3K|1|2y|C|56
9O3K|1|2y|G|57
9O3K|1|2y|A|58
9O3K|1|2y|A|59
9O3K|1|2y|U|60
9O3K|1|2y|C|61
Current chains
- Chain 2y
- E-site Deacylated tRNAlys
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: