HL_9O3V_007

3D structure

PDB id

9O3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

9O3V|1|L5|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3V_007 not in the Motif Atlas

Homologous match to HL_8GLP_007

Geometric discrepancy: 0.0954

The information below is about HL_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.7

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

18

Unit IDs

9O3V|1|L5|G|230
9O3V|1|L5|U|231
9O3V|1|L5|G|232
9O3V|1|L5|U|233
9O3V|1|L5|G|234
9O3V|1|L5|A|235
9O3V|1|L5|G|236
9O3V|1|L5|G|237
9O3V|1|L5|C|238

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24