HL_9O3W_007

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

9O3W|1|L5|G|232, 9O3W|1|L5|U|233, 9O3W|1|L5|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|G|230
9O3W|1|L5|U|231
9O3W|1|L5|G|232
9O3W|1|L5|U|233
9O3W|1|L5|G|234
9O3W|1|L5|A|235
9O3W|1|L5|G|236
9O3W|1|L5|G|237
9O3W|1|L5|C|238

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24