HL_9O3W_026

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

9O3W|1|L5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3W_026 not in the Motif Atlas

Homologous match to HL_8GLP_028

Geometric discrepancy: 0.0303

The information below is about HL_8GLP_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9O3W|1|L5|G|1864
9O3W|1|L5|G|1865
9O3W|1|L5|U|1866
9O3W|1|L5|A|1867
9O3W|1|L5|A|1868
9O3W|1|L5|G|1869
9O3W|1|L5|C|1870

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LI

Large ribosomal subunit protein uL16

Chain Lb

Large ribosomal subunit protein eL29