HL_9O3W_046

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

(PSU)UUAAUUAAAA

Length

11 nucleotides

Bulged bases

9O3W|1|L5|A|3642, 9O3W|1|L5|A|3643, 9O3W|1|L5|U|3644, 9O3W|1|L5|A|3648

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|PSU|3639
9O3W|1|L5|U|3640
9O3W|1|L5|U|3641
9O3W|1|L5|A|3642
9O3W|1|L5|A|3643
9O3W|1|L5|U|3644
9O3W|1|L5|U|3645
9O3W|1|L5|A|3646
9O3W|1|L5|A|3647
9O3W|1|L5|A|3648
9O3W|1|L5|A|3649

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

Large ribosomal subunit protein eL37

Chain NC

Nascent chain