HL_9O3W_055

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

9O3W|1|L5|A|4214, 9O3W|1|L5|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|U|4210
9O3W|1|L5|C|4211
9O3W|1|L5|A|4212
9O3W|1|L5|A|4213
9O3W|1|L5|A|4214
9O3W|1|L5|C|4215
9O3W|1|L5|G|4216
9O3W|1|L5|G|4217
9O3W|1|L5|U|4218
9O3W|1|L5|A|4219
9O3W|1|L5|6MZ|4220
9O3W|1|L5|C|4221
9O3W|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LI

Large ribosomal subunit protein uL16

Chain LT

Large ribosomal subunit protein eL21

Chain Lb

Large ribosomal subunit protein eL29