HL_9O3W_066

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3W_066 not in the Motif Atlas

Homologous match to HL_8GLP_071

Geometric discrepancy: 0.0372

The information below is about HL_8GLP_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9O3W|1|L5|U|4646
9O3W|1|L5|G|4647
9O3W|1|L5|A|4648
9O3W|1|L5|G|4649
9O3W|1|L5|G|4650
9O3W|1|L5|A|4651

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain LU

Large ribosomal subunit protein eL22

Chain Ld

Large ribosomal subunit protein eL31