HL_9O3W_067

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9O3W|1|L5|G|4694, 9O3W|1|L5|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3W_067 not in the Motif Atlas

Homologous match to HL_9H3G_068

Geometric discrepancy: 0.0498

The information below is about HL_9H3G_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.4

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

9O3W|1|L5|C|4688
9O3W|1|L5|PSU|4689
9O3W|1|L5|G|4690
9O3W|1|L5|A|4691
9O3W|1|L5|A|4692
9O3W|1|L5|C|4693
9O3W|1|L5|G|4694
9O3W|1|L5|C|4695
9O3W|1|L5|C|4696
9O3W|1|L5|U|4697
9O3W|1|L5|C|4698
9O3W|1|L5|U|4699
9O3W|1|L5|A|4700
9O3W|1|L5|A|4701
9O3W|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain LO

Large ribosomal subunit protein uL13

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein