HL_9O3W_069

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9O3W|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3W_069 not in the Motif Atlas

Homologous match to HL_8GLP_075

Geometric discrepancy: 0.0429

The information below is about HL_8GLP_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.3

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9O3W|1|L5|G|4975
9O3W|1|L5|U|4976
9O3W|1|L5|A|4977
9O3W|1|L5|G|4978
9O3W|1|L5|A|4979
9O3W|1|L5|C|4980
9O3W|1|L5|G|4981
9O3W|1|L5|A|4982
9O3W|1|L5|C|4983

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

Large ribosomal subunit protein uL22